Left reads: Input : 208907 Mapped : 173482 (83.0% of input) of these: 6549 ( 3.8%) have multiple alignments (102 have >20) Right reads: Input : 208907 Mapped : 162845 (78.0% of input) of these: 6172 ( 3.8%) have multiple alignments (102 have >20) 80.5% overall read mapping rate. Aligned pairs: 144621 of these: 5543 ( 3.8%) have multiple alignments 4039 ( 2.8%) are discordant alignments 67.3% concordant pair alignment rate.