Left reads: Input : 521441 Mapped : 447946 (85.9% of input) of these: 11567 ( 2.6%) have multiple alignments (545 have >20) Right reads: Input : 521441 Mapped : 435228 (83.5% of input) of these: 11284 ( 2.6%) have multiple alignments (545 have >20) 84.7% overall read mapping rate. Aligned pairs: 384920 of these: 9908 ( 2.6%) have multiple alignments 6859 ( 1.8%) are discordant alignments 72.5% concordant pair alignment rate.