Left reads: Input : 414800 Mapped : 368345 (88.8% of input) of these: 32539 ( 8.8%) have multiple alignments (5338 have >20) Right reads: Input : 414800 Mapped : 352036 (84.9% of input) of these: 31557 ( 9.0%) have multiple alignments (5338 have >20) 86.8% overall read mapping rate. Aligned pairs: 321550 of these: 28773 ( 8.9%) have multiple alignments 6717 ( 2.1%) are discordant alignments 75.9% concordant pair alignment rate.