Left reads: Input : 279739 Mapped : 228703 (81.8% of input) of these: 9560 ( 4.2%) have multiple alignments (661 have >20) Right reads: Input : 279739 Mapped : 227339 (81.3% of input) of these: 9588 ( 4.2%) have multiple alignments (661 have >20) 81.5% overall read mapping rate. Aligned pairs: 195423 of these: 8149 ( 4.2%) have multiple alignments 3884 ( 2.0%) are discordant alignments 68.5% concordant pair alignment rate.