Left reads: Input : 343266 Mapped : 287342 (83.7% of input) of these: 18720 ( 6.5%) have multiple alignments (1104 have >20) Right reads: Input : 343266 Mapped : 272677 (79.4% of input) of these: 18029 ( 6.6%) have multiple alignments (1104 have >20) 81.6% overall read mapping rate. Aligned pairs: 239279 of these: 15862 ( 6.6%) have multiple alignments 5622 ( 2.3%) are discordant alignments 68.1% concordant pair alignment rate.