Left reads: Input : 370001 Mapped : 327774 (88.6% of input) of these: 10690 ( 3.3%) have multiple alignments (913 have >20) Right reads: Input : 370001 Mapped : 316204 (85.5% of input) of these: 10469 ( 3.3%) have multiple alignments (913 have >20) 87.0% overall read mapping rate. Aligned pairs: 288146 of these: 9449 ( 3.3%) have multiple alignments 5359 ( 1.9%) are discordant alignments 76.4% concordant pair alignment rate.