Left reads: Input : 203467 Mapped : 166288 (81.7% of input) of these: 5915 ( 3.6%) have multiple alignments (98 have >20) Right reads: Input : 203467 Mapped : 166487 (81.8% of input) of these: 5983 ( 3.6%) have multiple alignments (98 have >20) 81.8% overall read mapping rate. Aligned pairs: 145210 of these: 5257 ( 3.6%) have multiple alignments 3046 ( 2.1%) are discordant alignments 69.9% concordant pair alignment rate.