Left reads: Input : 261001 Mapped : 215339 (82.5% of input) of these: 6430 ( 3.0%) have multiple alignments (800 have >20) Right reads: Input : 261001 Mapped : 209822 (80.4% of input) of these: 6169 ( 2.9%) have multiple alignments (800 have >20) 81.4% overall read mapping rate. Aligned pairs: 182316 of these: 5390 ( 3.0%) have multiple alignments 3303 ( 1.8%) are discordant alignments 68.6% concordant pair alignment rate.