Left reads: Input : 393663 Mapped : 345930 (87.9% of input) of these: 11134 ( 3.2%) have multiple alignments (1362 have >20) Right reads: Input : 393663 Mapped : 331927 (84.3% of input) of these: 10471 ( 3.2%) have multiple alignments (1362 have >20) 86.1% overall read mapping rate. Aligned pairs: 301657 of these: 9429 ( 3.1%) have multiple alignments 7210 ( 2.4%) are discordant alignments 74.8% concordant pair alignment rate.