Left reads: Input : 418603 Mapped : 359823 (86.0% of input) of these: 12295 ( 3.4%) have multiple alignments (1419 have >20) Right reads: Input : 418603 Mapped : 344171 (82.2% of input) of these: 11785 ( 3.4%) have multiple alignments (1419 have >20) 84.1% overall read mapping rate. Aligned pairs: 307706 of these: 10559 ( 3.4%) have multiple alignments 5866 ( 1.9%) are discordant alignments 72.1% concordant pair alignment rate.