Left reads: Input : 513096 Mapped : 434549 (84.7% of input) of these: 42433 ( 9.8%) have multiple alignments (1660 have >20) Right reads: Input : 513096 Mapped : 412368 (80.4% of input) of these: 41001 ( 9.9%) have multiple alignments (1660 have >20) 82.5% overall read mapping rate. Aligned pairs: 361091 of these: 35993 (10.0%) have multiple alignments 11423 ( 3.2%) are discordant alignments 68.1% concordant pair alignment rate.