Left reads: Input : 209328 Mapped : 167071 (79.8% of input) of these: 13075 ( 7.8%) have multiple alignments (820 have >20) Right reads: Input : 209328 Mapped : 157257 (75.1% of input) of these: 12566 ( 8.0%) have multiple alignments (820 have >20) 77.5% overall read mapping rate. Aligned pairs: 134132 of these: 11003 ( 8.2%) have multiple alignments 4746 ( 3.5%) are discordant alignments 61.8% concordant pair alignment rate.