Left reads: Input : 102617 Mapped : 82231 (80.1% of input) of these: 7717 ( 9.4%) have multiple alignments (166 have >20) Right reads: Input : 102617 Mapped : 78449 (76.4% of input) of these: 7448 ( 9.5%) have multiple alignments (166 have >20) 78.3% overall read mapping rate. Aligned pairs: 68548 of these: 6554 ( 9.6%) have multiple alignments 1546 ( 2.3%) are discordant alignments 65.3% concordant pair alignment rate.