Left reads: Input : 257818 Mapped : 209950 (81.4% of input) of these: 15916 ( 7.6%) have multiple alignments (343 have >20) Right reads: Input : 257818 Mapped : 204850 (79.5% of input) of these: 15723 ( 7.7%) have multiple alignments (343 have >20) 80.4% overall read mapping rate. Aligned pairs: 177493 of these: 13636 ( 7.7%) have multiple alignments 3361 ( 1.9%) are discordant alignments 67.5% concordant pair alignment rate.