Left reads: Input : 533833 Mapped : 468293 (87.7% of input) of these: 12436 ( 2.7%) have multiple alignments (430 have >20) Right reads: Input : 533833 Mapped : 462051 (86.6% of input) of these: 12498 ( 2.7%) have multiple alignments (430 have >20) 87.1% overall read mapping rate. Aligned pairs: 419454 of these: 11189 ( 2.7%) have multiple alignments 6209 ( 1.5%) are discordant alignments 77.4% concordant pair alignment rate.