Left reads: Input : 438819 Mapped : 367699 (83.8% of input) of these: 11337 ( 3.1%) have multiple alignments (938 have >20) Right reads: Input : 438819 Mapped : 351583 (80.1% of input) of these: 10891 ( 3.1%) have multiple alignments (938 have >20) 82.0% overall read mapping rate. Aligned pairs: 311545 of these: 9604 ( 3.1%) have multiple alignments 6521 ( 2.1%) are discordant alignments 69.5% concordant pair alignment rate.