Left reads: Input : 414290 Mapped : 364615 (88.0% of input) of these: 14189 ( 3.9%) have multiple alignments (1465 have >20) Right reads: Input : 414290 Mapped : 357444 (86.3% of input) of these: 13852 ( 3.9%) have multiple alignments (1465 have >20) 87.1% overall read mapping rate. Aligned pairs: 326001 of these: 12626 ( 3.9%) have multiple alignments 6932 ( 2.1%) are discordant alignments 77.0% concordant pair alignment rate.