Left reads: Input : 560338 Mapped : 501422 (89.5% of input) of these: 29001 ( 5.8%) have multiple alignments (4106 have >20) Right reads: Input : 560338 Mapped : 480684 (85.8% of input) of these: 28168 ( 5.9%) have multiple alignments (4109 have >20) 87.6% overall read mapping rate. Aligned pairs: 441124 of these: 25762 ( 5.8%) have multiple alignments 6690 ( 1.5%) are discordant alignments 77.5% concordant pair alignment rate.