Left reads: Input : 304491 Mapped : 260411 (85.5% of input) of these: 6535 ( 2.5%) have multiple alignments (435 have >20) Right reads: Input : 304491 Mapped : 246501 (81.0% of input) of these: 6291 ( 2.6%) have multiple alignments (435 have >20) 83.2% overall read mapping rate. Aligned pairs: 221177 of these: 5548 ( 2.5%) have multiple alignments 3737 ( 1.7%) are discordant alignments 71.4% concordant pair alignment rate.