Left reads: Input : 432884 Mapped : 374452 (86.5% of input) of these: 17232 ( 4.6%) have multiple alignments (804 have >20) Right reads: Input : 432884 Mapped : 345625 (79.8% of input) of these: 16235 ( 4.7%) have multiple alignments (804 have >20) 83.2% overall read mapping rate. Aligned pairs: 311076 of these: 14734 ( 4.7%) have multiple alignments 6603 ( 2.1%) are discordant alignments 70.3% concordant pair alignment rate.