Left reads: Input : 337775 Mapped : 287966 (85.3% of input) of these: 10380 ( 3.6%) have multiple alignments (1061 have >20) Right reads: Input : 337775 Mapped : 272089 (80.6% of input) of these: 9805 ( 3.6%) have multiple alignments (1061 have >20) 82.9% overall read mapping rate. Aligned pairs: 244699 of these: 8822 ( 3.6%) have multiple alignments 4742 ( 1.9%) are discordant alignments 71.0% concordant pair alignment rate.