Left reads: Input : 295527 Mapped : 250638 (84.8% of input) of these: 24752 ( 9.9%) have multiple alignments (3450 have >20) Right reads: Input : 295527 Mapped : 238588 (80.7% of input) of these: 23980 (10.1%) have multiple alignments (3450 have >20) 82.8% overall read mapping rate. Aligned pairs: 211678 of these: 21546 (10.2%) have multiple alignments 5419 ( 2.6%) are discordant alignments 69.8% concordant pair alignment rate.