Left reads: Input : 341695 Mapped : 288978 (84.6% of input) of these: 14798 ( 5.1%) have multiple alignments (1222 have >20) Right reads: Input : 341695 Mapped : 270097 (79.0% of input) of these: 13903 ( 5.1%) have multiple alignments (1222 have >20) 81.8% overall read mapping rate. Aligned pairs: 239811 of these: 12329 ( 5.1%) have multiple alignments 6287 ( 2.6%) are discordant alignments 68.3% concordant pair alignment rate.