Left reads: Input : 345106 Mapped : 293336 (85.0% of input) of these: 10240 ( 3.5%) have multiple alignments (584 have >20) Right reads: Input : 345106 Mapped : 275691 (79.9% of input) of these: 9875 ( 3.6%) have multiple alignments (584 have >20) 82.4% overall read mapping rate. Aligned pairs: 245313 of these: 8544 ( 3.5%) have multiple alignments 4279 ( 1.7%) are discordant alignments 69.8% concordant pair alignment rate.