Left reads: Input : 487495 Mapped : 417562 (85.7% of input) of these: 37170 ( 8.9%) have multiple alignments (5649 have >20) Right reads: Input : 487495 Mapped : 396315 (81.3% of input) of these: 35706 ( 9.0%) have multiple alignments (5647 have >20) 83.5% overall read mapping rate. Aligned pairs: 352044 of these: 31752 ( 9.0%) have multiple alignments 8800 ( 2.5%) are discordant alignments 70.4% concordant pair alignment rate.