Left reads: Input : 506353 Mapped : 431852 (85.3% of input) of these: 14619 ( 3.4%) have multiple alignments (1107 have >20) Right reads: Input : 506353 Mapped : 413025 (81.6% of input) of these: 14083 ( 3.4%) have multiple alignments (1107 have >20) 83.4% overall read mapping rate. Aligned pairs: 367069 of these: 12499 ( 3.4%) have multiple alignments 7292 ( 2.0%) are discordant alignments 71.1% concordant pair alignment rate.