Left reads: Input : 428691 Mapped : 378709 (88.3% of input) of these: 15921 ( 4.2%) have multiple alignments (1390 have >20) Right reads: Input : 428691 Mapped : 363067 (84.7% of input) of these: 15457 ( 4.3%) have multiple alignments (1390 have >20) 86.5% overall read mapping rate. Aligned pairs: 331995 of these: 14050 ( 4.2%) have multiple alignments 7018 ( 2.1%) are discordant alignments 75.8% concordant pair alignment rate.