Left reads: Input : 676244 Mapped : 591528 (87.5% of input) of these: 46620 ( 7.9%) have multiple alignments (9585 have >20) Right reads: Input : 676244 Mapped : 569688 (84.2% of input) of these: 45636 ( 8.0%) have multiple alignments (9585 have >20) 85.9% overall read mapping rate. Aligned pairs: 512781 of these: 40853 ( 8.0%) have multiple alignments 11223 ( 2.2%) are discordant alignments 74.2% concordant pair alignment rate.