Left reads: Input : 1124132 Mapped : 931409 (82.9% of input) of these: 46701 ( 5.0%) have multiple alignments (4910 have >20) Right reads: Input : 1124132 Mapped : 958053 (85.2% of input) of these: 48079 ( 5.0%) have multiple alignments (4910 have >20) 84.0% overall read mapping rate. Aligned pairs: 856980 of these: 43620 ( 5.1%) have multiple alignments 13215 ( 1.5%) are discordant alignments 75.1% concordant pair alignment rate.