Left reads: Input : 3329734 Mapped : 2922269 (87.8% of input) of these: 826347 (28.3%) have multiple alignments (167630 have >20) Right reads: Input : 3329734 Mapped : 2878770 (86.5% of input) of these: 819322 (28.5%) have multiple alignments (167635 have >20) 87.1% overall read mapping rate. Aligned pairs: 2608916 of these: 748270 (28.7%) have multiple alignments 54019 ( 2.1%) are discordant alignments 76.7% concordant pair alignment rate.