Left reads: Input : 1411890 Mapped : 1213162 (85.9% of input) of these: 53449 ( 4.4%) have multiple alignments (7301 have >20) Right reads: Input : 1411890 Mapped : 1178579 (83.5% of input) of these: 52444 ( 4.4%) have multiple alignments (7301 have >20) 84.7% overall read mapping rate. Aligned pairs: 1078550 of these: 48431 ( 4.5%) have multiple alignments 20454 ( 1.9%) are discordant alignments 74.9% concordant pair alignment rate.