Left reads: Input : 519342 Mapped : 441617 (85.0% of input) of these: 32853 ( 7.4%) have multiple alignments (5132 have >20) Right reads: Input : 519342 Mapped : 427611 (82.3% of input) of these: 32190 ( 7.5%) have multiple alignments (5132 have >20) 83.7% overall read mapping rate. Aligned pairs: 392102 of these: 29307 ( 7.5%) have multiple alignments 6327 ( 1.6%) are discordant alignments 74.3% concordant pair alignment rate.