Left reads: Input : 458404 Mapped : 386282 (84.3% of input) of these: 13914 ( 3.6%) have multiple alignments (1492 have >20) Right reads: Input : 458404 Mapped : 376860 (82.2% of input) of these: 13675 ( 3.6%) have multiple alignments (1491 have >20) 83.2% overall read mapping rate. Aligned pairs: 343516 of these: 12638 ( 3.7%) have multiple alignments 3497 ( 1.0%) are discordant alignments 74.2% concordant pair alignment rate.