Left reads: Input : 561254 Mapped : 479241 (85.4% of input) of these: 15355 ( 3.2%) have multiple alignments (207 have >20) Right reads: Input : 561254 Mapped : 443908 (79.1% of input) of these: 14454 ( 3.3%) have multiple alignments (207 have >20) Unpaired reads: Input : 45194 Mapped : 38689 (85.6% of input) of these: 1186 ( 3.1%) have multiple alignments (0 have >20) 82.4% overall read mapping rate. Aligned pairs: 393052 of these: 12909 ( 3.3%) have multiple alignments 10974 ( 2.8%) are discordant alignments 68.1% concordant pair alignment rate.