Left reads: Input : 825946 Mapped : 704054 (85.2% of input) of these: 13580 ( 1.9%) have multiple alignments (1553 have >20) Right reads: Input : 825946 Mapped : 681990 (82.6% of input) of these: 13214 ( 1.9%) have multiple alignments (1553 have >20) 83.9% overall read mapping rate. Aligned pairs: 621572 of these: 12282 ( 2.0%) have multiple alignments 5682 ( 0.9%) are discordant alignments 74.6% concordant pair alignment rate.