Left reads: Input : 1294621 Mapped : 1118715 (86.4% of input) of these: 55723 ( 5.0%) have multiple alignments (6397 have >20) Right reads: Input : 1294621 Mapped : 1084329 (83.8% of input) of these: 54519 ( 5.0%) have multiple alignments (6397 have >20) 85.1% overall read mapping rate. Aligned pairs: 997478 of these: 50534 ( 5.1%) have multiple alignments 18552 ( 1.9%) are discordant alignments 75.6% concordant pair alignment rate.