Left reads: Input : 662305 Mapped : 566929 (85.6% of input) of these: 15196 ( 2.7%) have multiple alignments (1182 have >20) Right reads: Input : 662305 Mapped : 553582 (83.6% of input) of these: 15001 ( 2.7%) have multiple alignments (1182 have >20) 84.6% overall read mapping rate. Aligned pairs: 505700 of these: 13870 ( 2.7%) have multiple alignments 6432 ( 1.3%) are discordant alignments 75.4% concordant pair alignment rate.