Left reads: Input : 1175344 Mapped : 1031205 (87.7% of input) of these: 88652 ( 8.6%) have multiple alignments (6441 have >20) Right reads: Input : 1175344 Mapped : 998523 (85.0% of input) of these: 87315 ( 8.7%) have multiple alignments (6441 have >20) 86.3% overall read mapping rate. Aligned pairs: 909818 of these: 81254 ( 8.9%) have multiple alignments 16307 ( 1.8%) are discordant alignments 76.0% concordant pair alignment rate.