Left reads: Input : 668400 Mapped : 557990 (83.5% of input) of these: 33592 ( 6.0%) have multiple alignments (6179 have >20) Right reads: Input : 668400 Mapped : 573863 (85.9% of input) of these: 34543 ( 6.0%) have multiple alignments (6179 have >20) 84.7% overall read mapping rate. Aligned pairs: 498684 of these: 30406 ( 6.1%) have multiple alignments 12727 ( 2.6%) are discordant alignments 72.7% concordant pair alignment rate.