Left reads: Input : 1084354 Mapped : 874707 (80.7% of input) of these: 76555 ( 8.8%) have multiple alignments (8003 have >20) Right reads: Input : 1084354 Mapped : 932033 (86.0% of input) of these: 81307 ( 8.7%) have multiple alignments (8003 have >20) 83.3% overall read mapping rate. Aligned pairs: 775954 of these: 69358 ( 8.9%) have multiple alignments 13840 ( 1.8%) are discordant alignments 70.3% concordant pair alignment rate.