Left reads: Input : 1698265 Mapped : 1536151 (90.5% of input) of these: 161395 (10.5%) have multiple alignments (20617 have >20) Right reads: Input : 1698265 Mapped : 1455069 (85.7% of input) of these: 156486 (10.8%) have multiple alignments (20617 have >20) 88.1% overall read mapping rate. Aligned pairs: 1348834 of these: 145903 (10.8%) have multiple alignments 28848 ( 2.1%) are discordant alignments 77.7% concordant pair alignment rate.