Left reads: Input : 398268 Mapped : 334010 (83.9% of input) of these: 9707 ( 2.9%) have multiple alignments (664 have >20) Right reads: Input : 398268 Mapped : 321316 (80.7% of input) of these: 9460 ( 2.9%) have multiple alignments (664 have >20) 82.3% overall read mapping rate. Aligned pairs: 283999 of these: 8335 ( 2.9%) have multiple alignments 5989 ( 2.1%) are discordant alignments 69.8% concordant pair alignment rate.