Left reads: Input : 231089 Mapped : 182879 (79.1% of input) of these: 6378 ( 3.5%) have multiple alignments (825 have >20) Right reads: Input : 231089 Mapped : 184594 (79.9% of input) of these: 6481 ( 3.5%) have multiple alignments (825 have >20) 79.5% overall read mapping rate. Aligned pairs: 152946 of these: 5359 ( 3.5%) have multiple alignments 3248 ( 2.1%) are discordant alignments 64.8% concordant pair alignment rate.