Left reads: Input : 1458206 Mapped : 1301398 (89.2% of input) of these: 280065 (21.5%) have multiple alignments (56060 have >20) Right reads: Input : 1458206 Mapped : 1245705 (85.4% of input) of these: 272133 (21.8%) have multiple alignments (55927 have >20) 87.3% overall read mapping rate. Aligned pairs: 1141344 of these: 250015 (21.9%) have multiple alignments 26839 ( 2.4%) are discordant alignments 76.4% concordant pair alignment rate.