Left reads: Input : 1862548 Mapped : 1688254 (90.6% of input) of these: 130902 ( 7.8%) have multiple alignments (15339 have >20) Right reads: Input : 1862548 Mapped : 1562515 (83.9% of input) of these: 124394 ( 8.0%) have multiple alignments (15339 have >20) 87.3% overall read mapping rate. Aligned pairs: 1454316 of these: 116204 ( 8.0%) have multiple alignments 27466 ( 1.9%) are discordant alignments 76.6% concordant pair alignment rate.