Left reads: Input : 760091 Mapped : 662784 (87.2% of input) of these: 53111 ( 8.0%) have multiple alignments (12546 have >20) Right reads: Input : 760091 Mapped : 642652 (84.5% of input) of these: 52347 ( 8.1%) have multiple alignments (12583 have >20) 85.9% overall read mapping rate. Aligned pairs: 582206 of these: 47764 ( 8.2%) have multiple alignments 15667 ( 2.7%) are discordant alignments 74.5% concordant pair alignment rate.