Left reads: Input : 279045 Mapped : 234840 (84.2% of input) of these: 14351 ( 6.1%) have multiple alignments (697 have >20) Right reads: Input : 279045 Mapped : 224186 (80.3% of input) of these: 13939 ( 6.2%) have multiple alignments (697 have >20) 82.2% overall read mapping rate. Aligned pairs: 197390 of these: 12381 ( 6.3%) have multiple alignments 4714 ( 2.4%) are discordant alignments 69.0% concordant pair alignment rate.