Left reads: Input : 226214 Mapped : 188104 (83.2% of input) of these: 7112 ( 3.8%) have multiple alignments (77 have >20) Right reads: Input : 226214 Mapped : 178073 (78.7% of input) of these: 6950 ( 3.9%) have multiple alignments (77 have >20) 80.9% overall read mapping rate. Aligned pairs: 156932 of these: 6102 ( 3.9%) have multiple alignments 2211 ( 1.4%) are discordant alignments 68.4% concordant pair alignment rate.