Left reads: Input : 474979 Mapped : 401893 (84.6% of input) of these: 45912 (11.4%) have multiple alignments (9592 have >20) Right reads: Input : 474979 Mapped : 369389 (77.8% of input) of these: 43105 (11.7%) have multiple alignments (9592 have >20) 81.2% overall read mapping rate. Aligned pairs: 326407 of these: 38464 (11.8%) have multiple alignments 9704 ( 3.0%) are discordant alignments 66.7% concordant pair alignment rate.