Left reads: Input : 1017590 Mapped : 796401 (78.3% of input) of these: 57681 ( 7.2%) have multiple alignments (5158 have >20) Right reads: Input : 1017590 Mapped : 788433 (77.5% of input) of these: 57565 ( 7.3%) have multiple alignments (5159 have >20) 77.9% overall read mapping rate. Aligned pairs: 667216 of these: 48099 ( 7.2%) have multiple alignments 16003 ( 2.4%) are discordant alignments 64.0% concordant pair alignment rate.